PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11563.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 281aa    MW: 30407.4 Da    PI: 7.9116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11563.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-0895119126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaH+
  Jcr4S11563.20  95 FKTKLCCKFRA-GTCPYITNCNFAHS 119
                    69*********.*************8 PP

2zf-CCCH192.5e-06167192126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  Jcr4S11563.20 167 YKGRHCKKFYTEEGCPYGDNCTFLHD 192
                    78888********************7 PP

3zf-CCCH42.31.3e-13244269126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  Jcr4S11563.20 244 WKTRICNKWELTGYCPFGNKCHFAHG 269
                    8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-1492127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-892125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8494121IPR000571Zinc finger, CCCH-type
SMARTSM003560.003594120IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9164194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-8165194IPR000571Zinc finger, CCCH-type
SMARTSM003560.058166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23166194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-15239270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9240269IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-9243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347243271IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-11244269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDYGRDFSSG NVVHVIPGSG PENWLPNSLD SSSVWATEDD YHAWNNSSDG PNDNTSSNPN  60
FQSSQSRSGS EPPNKKSKNN SQELTSKKSI GKMFFKTKLC CKFRAGTCPY ITNCNFAHSI  120
EELRRPPPNW QEIVAAHEEE KGTAIEIREE FQIPSIGGFG GETQRSYKGR HCKKFYTEEG  180
CPYGDNCTFL HDEQSKNRES VAISLGPGGY GGRRGRGGGG GSAAAGGAGG GNGAGAGNIK  240
PSNWKTRICN KWELTGYCPF GNKCHFAHGS AGMSYQLLIV D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218GGRRGRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077912.11e-171PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM32e-97C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9SNT21e-149B9SNT2_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0003s09240.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.16e-98C3H family protein